Index

A

add_column_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method) add_component_to_dsd() (in module FAIRLinked.QBWorkflow.rdf_transformer)

add_relations() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) add_term_to_ontology() (in module FAIRLinked.InterfaceMDS.add_ontology_term) AnalysisGroup (class in FAIRLinked) (class in FAIRLinked.RDFTableConversion) (class in FAIRLinked.RDFTableConversion.MDS_DF) (class in FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker) AnalysisTracker (class in FAIRLinked) (class in FAIRLinked.RDFTableConversion) (class in FAIRLinked.RDFTableConversion.MDS_DF) (class in FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker)

B

base_uri (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute)

C

check_if_running_experiment() (in module FAIRLinked.QBWorkflow.input_handler) check_ingestion() (in module FAIRLinked.QBWorkflow.input_handler) check_valid_id() (in module FAIRLinked.QBWorkflow.input_handler) choose_conversion_mode() (in module FAIRLinked.QBWorkflow.input_handler) classify_leaf_nodes() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer) compute_file_hash() (in module FAIRLinked.QBWorkflow.rdf_transformer) convert_dataset_to_rdf_with_mode() (in module FAIRLinked.QBWorkflow.rdf_transformer) convert_entire_dataset() (in module FAIRLinked.QBWorkflow.rdf_transformer) convert_row_by_row() (in module FAIRLinked.QBWorkflow.rdf_transformer) convert_row_by_row_CRADLE() (in module FAIRLinked.QBWorkflow.rdf_transformer) create_analysis_jsonld() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) create_arg_df() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) create_dsd() (in module FAIRLinked.QBWorkflow.rdf_transformer) create_group_arg_df() (FAIRLinked.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method)

create_group_report() (FAIRLinked.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) create_MatDatSciDf() (FAIRLinked.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) create_metadata_template() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) create_observation() (in module FAIRLinked.QBWorkflow.rdf_transformer) create_observation_2() (in module FAIRLinked.QBWorkflow.rdf_transformer) create_report() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) create_root_folder() (in module FAIRLinked.QBWorkflow.rdf_transformer) create_subfolders() (in module FAIRLinked.QBWorkflow.rdf_transformer)

D

data_relations (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) DataRelationsDict (class in FAIRLinked.RDFTableConversion.MDS_DF) (class in FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager) delete_column_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method) delete_relation() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method)

detect_all_imports() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) df (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) df_name (FAIRLinked.MatDatSciDf attribute), [1] (FAIRLinked.RDFTableConversion.MatDatSciDf attribute), [1] (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute), [1] (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute), [1] domain_subdomain_dir_interface() (in module FAIRLinked.InterfaceMDS.domain_subdomain_viewer) domain_subdomain_directory() (in module FAIRLinked.InterfaceMDS.domain_subdomain_viewer) domain_subdomain_viewer() (in module FAIRLinked.InterfaceMDS) (in module FAIRLinked.InterfaceMDS.domain_subdomain_viewer)

E

extract_data_from_csv() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler) extract_data_from_csv_interface() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler) extract_from_folder() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler) extract_quantity_kinds() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper)

extract_qudt_units() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) extract_subject_details() (in module FAIRLinked.InterfaceMDS.rdf_subject_extractor) extract_terms_from_ontology() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) extract_variables() (in module FAIRLinked.QBWorkflow.rdf_transformer)

F

FAIRLinked module FAIRLinked.InterfaceMDS module FAIRLinked.InterfaceMDS.add_ontology_term module FAIRLinked.InterfaceMDS.domain_subdomain_viewer module FAIRLinked.InterfaceMDS.load_mds_ontology module FAIRLinked.InterfaceMDS.rdf_subject_extractor module FAIRLinked.InterfaceMDS.term_search_general module FAIRLinked.QBWorkflow module FAIRLinked.QBWorkflow.data_parser module FAIRLinked.QBWorkflow.data_template_generator module FAIRLinked.QBWorkflow.input_handler module FAIRLinked.QBWorkflow.mds_ontology_analyzer module FAIRLinked.QBWorkflow.namespace_parser module FAIRLinked.QBWorkflow.namespace_template_generator module FAIRLinked.QBWorkflow.rdf_data_cube_workflow module FAIRLinked.QBWorkflow.rdf_to_df module

FAIRLinked.QBWorkflow.rdf_transformer module FAIRLinked.QBWorkflow.utility module FAIRLinked.RDFTableConversion module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler module FAIRLinked.RDFTableConversion.jsonld_batch_converter module FAIRLinked.RDFTableConversion.MDS_DF module FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker module FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager module FAIRLinked.RDFTableConversion.MDS_DF.main module FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager module filter_interface() (in module FAIRLinked.InterfaceMDS.term_search_general) find_best_match() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) find_leaf_nodes() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer) format_term() (in module FAIRLinked.InterfaceMDS.add_ontology_term) from_rdf_dir() (FAIRLinked.MatDatSciDf class method) (FAIRLinked.RDFTableConversion.MatDatSciDf class method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf class method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf class method) fuzzy_filter_subjects_strict() (in module FAIRLinked.InterfaceMDS.rdf_subject_extractor) fuzzy_search_interface() (in module FAIRLinked.InterfaceMDS.rdf_subject_extractor)

G

generate_data_xlsx_template() (in module FAIRLinked.QBWorkflow.data_template_generator) generate_namespace_excel() (in module FAIRLinked.QBWorkflow.namespace_template_generator) generate_prop_metadata_dict() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler) get_adaptive_distance() (in module FAIRLinked.InterfaceMDS.rdf_subject_extractor) get_approved_id_columns() (in module FAIRLinked.QBWorkflow.input_handler) get_classification() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer) get_context() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) get_dataset_name() (in module FAIRLinked.QBWorkflow.input_handler) get_domain() (in module FAIRLinked.QBWorkflow.input_handler) get_identifiers() (in module FAIRLinked.QBWorkflow.input_handler) get_input_data_excel() (in module FAIRLinked.QBWorkflow.input_handler) get_input_namespace_excel() (in module FAIRLinked.QBWorkflow.input_handler)

get_license() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) get_local_name() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) get_namespace_for_dataset() (in module FAIRLinked.QBWorkflow.input_handler) get_ontology_file() (in module FAIRLinked.QBWorkflow.input_handler) get_orcid() (in module FAIRLinked.QBWorkflow.input_handler) get_output_folder_path() (in module FAIRLinked.QBWorkflow.input_handler) get_prefixed_name() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer) get_property_uri() (in module FAIRLinked.QBWorkflow.rdf_transformer) get_relation_pairs_onto() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) get_relations() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) get_row_identifier_columns() (in module FAIRLinked.QBWorkflow.input_handler) get_term_details() (in module FAIRLinked.InterfaceMDS.add_ontology_term) get_top_level_terms_from_combined() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer)

H

has_all_ontology_files() (in module FAIRLinked.QBWorkflow.input_handler) has_existing_datacube_file() (in module FAIRLinked.QBWorkflow.input_handler) hash6() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler)

header_df (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute)

J

jsonld_directory_to_csv() (in module FAIRLinked.RDFTableConversion.jsonld_batch_converter)

jsonld_temp_gen_interface() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) jsonld_template_generator() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper)

L

load_licenses() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler)

load_mds_ontology_graph() (in module FAIRLinked.InterfaceMDS.load_mds_ontology)

M

matched_log (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute) MatDatSciDf (class in FAIRLinked) (class in FAIRLinked.RDFTableConversion) (class in FAIRLinked.RDFTableConversion.MDS_DF) (class in FAIRLinked.RDFTableConversion.MDS_DF.main) MDS (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute) mds_graph (FAIRLinked.AnalysisGroup attribute) (FAIRLinked.AnalysisTracker attribute) (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.AnalysisGroup attribute) (FAIRLinked.RDFTableConversion.AnalysisTracker attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup attribute) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker attribute) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup attribute) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) Metadata (class in FAIRLinked.RDFTableConversion.MDS_DF) (class in FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager) metadata_obj (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) metadata_temp (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute)

module FAIRLinked FAIRLinked.InterfaceMDS FAIRLinked.InterfaceMDS.add_ontology_term FAIRLinked.InterfaceMDS.domain_subdomain_viewer FAIRLinked.InterfaceMDS.load_mds_ontology FAIRLinked.InterfaceMDS.rdf_subject_extractor FAIRLinked.InterfaceMDS.term_search_general FAIRLinked.QBWorkflow FAIRLinked.QBWorkflow.data_parser FAIRLinked.QBWorkflow.data_template_generator FAIRLinked.QBWorkflow.input_handler FAIRLinked.QBWorkflow.mds_ontology_analyzer FAIRLinked.QBWorkflow.namespace_parser FAIRLinked.QBWorkflow.namespace_template_generator FAIRLinked.QBWorkflow.rdf_data_cube_workflow FAIRLinked.QBWorkflow.rdf_to_df FAIRLinked.QBWorkflow.rdf_transformer FAIRLinked.QBWorkflow.utility FAIRLinked.RDFTableConversion FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler FAIRLinked.RDFTableConversion.jsonld_batch_converter FAIRLinked.RDFTableConversion.MDS_DF FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager FAIRLinked.RDFTableConversion.MDS_DF.main FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager

N

normalize() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper)

O

ontology (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) orcid (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute) orcid_verified (FAIRLinked.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf attribute) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf attribute)

overwrite_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method)

P

parse_excel_to_namespace_map() (in module FAIRLinked.QBWorkflow.namespace_parser) parse_existing_datacube_workflow() (in module FAIRLinked.QBWorkflow.rdf_data_cube_workflow) parse_rdf_to_df() (in module FAIRLinked.QBWorkflow.rdf_to_df) prepare_namespaces() (in module FAIRLinked.QBWorkflow.rdf_transformer) print_data_relations() (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict method)

print_template() (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method) process_unit() (in module FAIRLinked.QBWorkflow.rdf_transformer) prompt_for_missing_fields() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper) prop_pair_dict (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict attribute) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict attribute)

Q

QUDT (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute)

R

rdf_data_cube_workflow_start() (in module FAIRLinked.QBWorkflow.rdf_data_cube_workflow) read_excel_template() (in module FAIRLinked.QBWorkflow.data_parser) resolve_predicate() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler) run_and_track() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method)

run_experiment_workflow() (in module FAIRLinked.QBWorkflow.rdf_data_cube_workflow) run_ingestion_workflow() (in module FAIRLinked.QBWorkflow.rdf_data_cube_workflow) run_standard_workflow() (in module FAIRLinked.QBWorkflow.rdf_data_cube_workflow)

S

save_jsonld() (FAIRLinked.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) save_mds_df() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) save_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method) save_relations() (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict method) save_report() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method)

search_license() (FAIRLinked.MatDatSciDf static method) (FAIRLinked.RDFTableConversion.MatDatSciDf static method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf static method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf static method) semantic_remapping() (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) serialize_analysis_jsonld() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) serialize_bulk() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) serialize_row() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) should_save_csv() (in module FAIRLinked.QBWorkflow.input_handler)

T

template_generator() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) template_graph (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute) term_search_general() (in module FAIRLinked.InterfaceMDS) (in module FAIRLinked.InterfaceMDS.term_search_general) track() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) track_dataframe() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method)

track_dict() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) track_list_array() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) track_other() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) track_simple_datatype() (FAIRLinked.AnalysisTracker method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method)

U

UNIT (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute) unmatched_log (FAIRLinked.RDFTableConversion.MDS_DF.Metadata attribute) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata attribute) update_bulk() (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method) update_category_colors() (in module FAIRLinked.QBWorkflow.mds_ontology_analyzer) update_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method)

update_metadata_bulk() (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) update_template() (FAIRLinked.RDFTableConversion.MDS_DF.Metadata method) (FAIRLinked.RDFTableConversion.MDS_DF.metadata_manager.Metadata method)

V

validate_data_relations() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.data_relations_manager.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.DataRelationsDict method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) validate_metadata() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) validate_orcid_format() (in module FAIRLinked.QBWorkflow.utility) view_data_relations() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method)

view_metadata() (FAIRLinked.AnalysisGroup method) (FAIRLinked.AnalysisTracker method) (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.AnalysisGroup method) (FAIRLinked.RDFTableConversion.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.analysis_tracker.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisGroup method) (FAIRLinked.RDFTableConversion.MDS_DF.AnalysisTracker method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method) view_relations() (FAIRLinked.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.main.MatDatSciDf method) (FAIRLinked.RDFTableConversion.MDS_DF.MatDatSciDf method)

W

write_license_triple() (in module FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler)

write_naming_conventions_doc() (in module FAIRLinked.QBWorkflow.rdf_transformer)