FAIRLinked package

Subpackages

• FAIRLinked.InterfaceMDS package
  • Submodules
  • FAIRLinked.InterfaceMDS.add_ontology_term module
    • add_term_to_ontology()
    • format_term()
    • get_term_details()
  • FAIRLinked.InterfaceMDS.convert_ttl_to_drawio module
    • convert_ttl_to_cemento()
  • FAIRLinked.InterfaceMDS.domain_subdomain_viewer module
    • domain_subdomain_dir_interface()
    • domain_subdomain_directory()
    • domain_subdomain_viewer()
  • FAIRLinked.InterfaceMDS.load_mds_ontology module
    • load_mds_ontology_graph()
  • FAIRLinked.InterfaceMDS.rdf_subject_extractor module
    • extract_subject_details()
    • fuzzy_filter_subjects_strict()
    • fuzzy_search_interface()
  • FAIRLinked.InterfaceMDS.term_search_general module
    • filter_interface()
    • term_search_general()
  • Module contents
    • domain_subdomain_viewer()
    • term_search_general()
• FAIRLinked.QBWorkflow package
  • Submodules
  • FAIRLinked.QBWorkflow.data_parser module
    • read_excel_template()
  • FAIRLinked.QBWorkflow.data_template_generator module
    • generate_data_xlsx_template()
  • FAIRLinked.QBWorkflow.input_handler module
    • check_if_running_experiment()
    • check_ingestion()
    • check_valid_id()
    • choose_conversion_mode()
    • get_approved_id_columns()
    • get_dataset_name()
    • get_domain()
    • get_identifiers()
    • get_input_data_excel()
    • get_input_namespace_excel()
    • get_namespace_for_dataset()
    • get_ontology_file()
    • get_orcid()
    • get_output_folder_path()
    • get_row_identifier_columns()
    • has_all_ontology_files()
    • has_existing_datacube_file()
    • should_save_csv()
  • FAIRLinked.QBWorkflow.mds_ontology_analyzer module
    • classify_leaf_nodes()
    • find_leaf_nodes()
    • get_classification()
    • get_prefixed_name()
    • get_top_level_terms_from_combined()
    • update_category_colors()
  • FAIRLinked.QBWorkflow.namespace_parser module
    • parse_excel_to_namespace_map()
  • FAIRLinked.QBWorkflow.namespace_template_generator module
    • generate_namespace_excel()
  • FAIRLinked.QBWorkflow.rdf_data_cube_workflow module
    • parse_existing_datacube_workflow()
    • rdf_data_cube_workflow_start()
    • run_experiment_workflow()
    • run_ingestion_workflow()
    • run_standard_workflow()
  • FAIRLinked.QBWorkflow.rdf_to_df module
    • parse_rdf_to_df()
  • FAIRLinked.QBWorkflow.rdf_transformer module
    • add_component_to_dsd()
    • compute_file_hash()
    • convert_dataset_to_rdf_with_mode()
    • convert_entire_dataset()
    • convert_row_by_row()
    • convert_row_by_row_CRADLE()
    • create_dsd()
    • create_observation()
    • create_observation_2()
    • create_root_folder()
    • create_subfolders()
    • extract_variables()
    • get_property_uri()
    • prepare_namespaces()
    • process_unit()
    • write_naming_conventions_doc()
  • FAIRLinked.QBWorkflow.utility module
    • validate_orcid_format()
  • Module contents
• FAIRLinked.RDFTableConversion package
  • Submodules
  • FAIRLinked.RDFTableConversion.csv_to_jsonld_mapper module
    • extract_terms_from_ontology()
    • find_best_match()
    • jsonld_temp_gen_interface()
    • jsonld_template_generator()
    • normalize()
  • FAIRLinked.RDFTableConversion.csv_to_jsonld_template_filler module
    • extract_data_from_csv()
    • extract_data_from_csv_interface()
    • extract_from_folder()
    • generate_prop_metadata_dict()
  • FAIRLinked.RDFTableConversion.jsonld_batch_converter module
    • extract_row_from_jsonld()
    • jsonld_directory_to_csv()
  • Module contents

Module contents